STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95344.1Hypothetical protein. (360 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
    
  0.927
adhE1
Aldehyde-alcohol dehydrogenase AdhE.
  
 
 0.756
adhE2
Aldehyde-alcohol dehydrogenase AdhE.
  
 
 0.756
adhE3
Aldehyde-alcohol dehydrogenase AdhE.
  
 
 0.756
carA
Zeta-carotene-forming phytoene desaturase CarA.
       0.705
KDR95773.1
Hypothetical protein.
  
 
 0.670
accC
Biotin carboxylase AccC; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.670
KDR95342.1
Hypothetical protein.
       0.656
lldD
L-lactate dehydrogenase; Cytochrome.
  
 
 0.584
aroE
Shikimate dehydrogenase AroE; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
    
 0.571
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.