STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95399.1L-lactate dehydrogenase. (413 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
  
 
 0.991
pyk
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
  
 0.979
KDR95398.1
Hypothetical protein.
 
   
 0.945
KDR95400.1
NADPH-dependent FMN reductase.
 
   
 0.924
gltA
Citrate synthase GltA; Belongs to the citrate synthase family.
  
 0.893
gltA-2
Citrate synthase GltA.
  
 0.893
lpdA-3
Dihydrolipoyl dehydrogenase LpdA.
  
 0.885
KDR95228.1
Ferredoxin.
  
 
 0.868
tdcB
L-threonine dehydratase catabolic TdcB.
    
 0.840
serA
D-3-phosphoglycerate dehydrogenase SerA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.806
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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