STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95451.1Hypothetical protein. (458 aa)    
Predicted Functional Partners:
KDR96017.1
Diguanylate cyclase/phosphodiesterase.
 
0.911
KDR95961.1
Diguanylate cyclase.
 
 0.897
KDR95638.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.892
cph1-2
Phytochrome-like protein Cph2.
 
 0.889
cph1
Phytochrome-like protein Cph2.
 
 
0.870
KDR94920.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.835
cph2
Phytochrome-like protein Cph2.
  
  0.827
dosC
Diguanylate cyclase DosC.
  
  0.827
KDR94613.1
Hypothetical protein.
  
  0.826
KDR96787.1
Sensor histidine kinase response regulator.
  
 
 0.822
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.