STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95594.1Hypothetical protein. (393 aa)    
Predicted Functional Partners:
sigE
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.973
KDR96775.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.892
KDR94942.1
Hypothetical protein; Belongs to the sigma-70 factor family.
  
 
 0.873
sigH
RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.
  
 
 0.873
KDR96611.1
Hypothetical protein.
  
 
 0.873
KDR96289.1
Hypothetical protein.
  
 
 0.873
KDR95596.1
Hypothetical protein.
 
     0.639
KDR96776.1
Anti-sigma factor.
  
     0.575
KDR94826.1
Hypothetical protein.
  
     0.574
KDR94897.1
Hypothetical protein.
  
     0.569
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.