STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stc5Signal-transduction and transcriptional-control protein Stc. (680 aa)    
Predicted Functional Partners:
KDR94562.1
Hypothetical protein.
 
  
 0.839
rpoN
Putative RNA polymerase sigma-54 factor RpoN.
 
  
 0.826
rpoN-2
Putative RNA polymerase sigma-54 factor RpoN.
 
  
 0.826
KDR96787.1
Sensor histidine kinase response regulator.
    
 0.809
aruS
Sensor histidine kinase AruS.
    
 0.770
barA
Signal transduction histidine-protein kinase BarA.
    
 0.761
KDR95606.1
Response regulator receiver protein.
    
 0.743
KDR95527.1
Diguanylate cyclase/phosphodiesterase.
     
 0.706
glnK
Sensor histidine kinase GlnK.
    
  0.608
glnL
Transcriptional regulatory protein GlnL.
       0.566
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.