STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysKO-acetylserine sulfhydrylase CysK. (310 aa)    
Predicted Functional Partners:
cysE
Serine acetyltransferase CysE.
 
 0.995
nirA
Ferredoxin--nitrite reductase NirA.
  
 
 0.957
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.953
cysS
cysteine--tRNA ligase CysS; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.952
cdr
Coenzyme A disulfide reductase Cdr; Belongs to the sulfur carrier protein TusA family.
  
 
 0.948
KDR94767.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
  
 0.932
mdeA1
Methionine gamma-lyase MdeA.
 
 0.925
mdeA1-2
Methionine gamma-lyase MdeA.
 
 0.925
metH
Methionine synthase MetH.
  
 
 0.900
serA
D-3-phosphoglycerate dehydrogenase SerA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.875
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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