STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyB2Amylopullulanase AmyB. (355 aa)    
Predicted Functional Partners:
epr
Minor extracellular protease Epr; Belongs to the peptidase S8 family.
 
 0.827
KDR94956.1
Thermophilic serine proteinase; Belongs to the peptidase S8 family.
 
 0.799
KDR94790.1
Hypothetical protein.
  
   
 0.773
csaB
Pyruvyl-transferase CsaB.
  
     0.771
KDR95493.1
Hypothetical protein.
  
     0.769
KDR96768.1
Hypothetical protein.
   
 0.764
KDR94826.1
Hypothetical protein.
  
     0.757
KDR96717.1
Hypothetical protein.
  
     0.755
epr-2
Minor extracellular protease Epr.
 0.748
KDR95481.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.