STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR93779.1Type II secretion system F protein. (326 aa)    
Predicted Functional Partners:
KDR93777.1
Response regulator receiver protein.
 
  
 0.997
KDR93780.1
Putative bacterial type II secretion system protein.
  
0.994
KDR93776.1
Flp pilus assembly protein.
 
  
 0.992
KDR93778.1
Putative conjugal transfer protein.
 
  
 0.992
KDR93775.1
Hypothetical protein.
 
  
 0.974
KDR93774.1
Hypothetical protein.
 
  
 0.973
KDR93781.1
Hypothetical protein.
 
     0.937
tadD
Flp pilus assembly protein TadD.
 
  
 0.924
KDR93773.1
Hypothetical protein.
  
  
 0.724
cph1-2
Phytochrome-like protein Cph2.
  
    0.592
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.