STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdA3D-proline reductase proprotein PrdA. (628 aa)    
Predicted Functional Partners:
prdB3
D-proline reductase subunit gamma PrdB.
  
 0.969
KDR93862.1
Hypothetical protein.
 
     0.935
prdB4
D-proline reductase subunit gamma.
  
 0.906
prdB1
D-proline reductase subunit gamma.
  
 0.894
prdB2
D-proline reductase subunit gamma.
  
 0.894
prdC3
Electron transfer protein PrdC.
 
   
 0.870
KDR93871.1
Hypothetical protein.
 
     0.806
prdC4
Electron transfer protein PrdC.
 
   
 0.802
KDR95289.1
Hypothetical protein.
 
     0.780
KDR95298.1
Hypothetical protein.
 
     0.780
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.