STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase 1; Synthesizes selenophosphate from selenide and ATP. (336 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase SelA; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.997
selU
tRNA 2-selenouridine synthase SelU.
   
 0.979
selB
Selenocysteine-specific elongation factor SelB.
 
   
 0.965
KDR95733.1
Xanthine and CO dehydrogenases maturation factor,XdhC/CoxF family.
 
  
 0.912
KDR96368.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.896
iscS2
Putative cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 0.892
nifS
Cysteine desulfurase NifS.
   
 0.790
iscS
Putative cysteine desulfurase IscS.
   
 0.783
iscS1
Putative cysteine desulfurase IscS.
   
 0.783
trxB
Thioredoxin reductase TrxB.
     
 0.782
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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