STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR94139.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
KDR94138.1
Putative glycosyl transferase.
 
     0.954
KDR94137.1
Putative glycosyltransferase.
 
     0.919
KDR94136.1
Hypothetical protein.
 
     0.916
KDR94135.1
Thiamin pyrophosphokinase.
 
     0.907
nudF
ADP-ribose pyrophosphatase NudF; Belongs to the Nudix hydrolase family.
       0.844
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
    
  0.807
KDR94180.1
Putative membrane protein.
  
     0.775
xerD
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
       0.538
KDR94198.1
Hypothetical protein.
  
     0.496
pspA1
Phosphoserine phosphatase 1; Belongs to the phosphoglycerate mutase family.
 
  
  0.487
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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