STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR96116.1Putative rubrerythrin. (178 aa)    
Predicted Functional Partners:
nasD
Nitrite reductase [NAD(P)H].
  
  
 0.613
KDR96463.1
Hypothetical protein.
  
 
  0.542
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
  
  
 0.508
KDR96117.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.507
KDR94976.1
NAD-binding oxidoreductase.
    
 
 0.503
KDR93734.1
NAD-binding oxidoreductase.
    
 
 0.503
pyrK
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit PyrK; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
    
 
 0.503
KDR95349.1
TIGR00153 family protein.
  
     0.481
KDR93922.1
TIGR00153 family protein.
  
     0.481
KDR96734.1
Hypothetical protein.
    
   0.452
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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