STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95938.1XRE family transcriptional regulator. (115 aa)    
Predicted Functional Partners:
cinA
Putative competence-damage inducible protein CinA; Belongs to the CinA family.
    
 0.833
KDR95937.1
Hypothetical protein.
     
 0.586
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
  
 
  0.570
KDR95939.1
Hypothetical protein.
  
    0.548
KDR95935.1
Putative prophage lambdaCh01, transcriptional regulator.
 
     0.494
levR
Transcriptional regulatory protein LevR.
  
 
  0.486
gmk
Guanylate kinase Gmk; Essential for recycling GMP and indirectly, cGMP.
   
 
 0.472
KDR95936.1
Hypothetical protein.
       0.460
alr
Alanine racemase Alr; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.421
murB
UDP-N-acetylenolpyruvoylglucosamine reductase MurB; Cell wall formation.
    
 0.409
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.