STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbr3AReverse rubrerythrin-1. (182 aa)    
Predicted Functional Partners:
nasD
Nitrite reductase [NAD(P)H].
 
  
 0.819
KDR94707.1
Ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.598
KDR94196.1
Hypothetical protein.
  
  
 0.558
gdh
NAD-specific glutamate dehydrogenase Gdh; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.488
gdh-2
NADP-specific glutamate dehydrogenase Gdh; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.488
KDR95652.1
Hypothetical protein.
  
  
 0.478
KDR94197.1
Desulfoferrodoxin.
  
  
 0.469
fliM
Flagellar motor switch protein FliM.
    
 
 0.455
msrAB
Peptide methionine sulfoxide reductase MsrA/MsrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.420
hcp2
Hydroxylamine reductase 2; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.419
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.