STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95956.1Tripartite ATP-independent periplasmic transporter DctQ component. (171 aa)    
Predicted Functional Partners:
KDR95955.1
Putative TRAP transporter large permease protein.
 
 0.994
siaT
Sialic acid TRAP transporter permease protein SiaT.
 
 0.975
KDR95953.1
TRAP dicarboxylate transporter DctP subunit.
 
  
 0.947
KDR94578.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.870
KDR95957.1
Putative hydrolase/peptidase y4tM.
 
     0.793
cpsA1
Thermostable carboxypeptidase 1.
       0.628
KDR95949.1
Arylmalonate decarboxylase.
 
     0.517
KDR96194.1
TRAP transporter, 4TM/12TM fusion protein.
  
     0.409
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.