STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDR95971.1Metal dependent phosphohydrolase. (320 aa)    
Predicted Functional Partners:
KDR96434.1
Hypothetical protein.
 
  
 0.800
pyk
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
    
  0.721
KDR96439.1
Diguanylate cyclase with GAF sensor.
 
 
 0.672
KDR95527.1
Diguanylate cyclase/phosphodiesterase.
 
  
 0.660
KDR95429.1
Diguanylate cyclase and metal dependent phosphohydrolase.
 
 
0.655
KDR95490.1
GGDEF domain-containing protein.
 
 
 0.639
KDR94562.1
Hypothetical protein.
    
 0.590
metH
Methionine synthase MetH.
     
 0.560
cph1-2
Phytochrome-like protein Cph2.
 
 0.535
KDR96787.1
Sensor histidine kinase response regulator.
  
 
 0.519
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.