STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAOligopeptide-binding protein OppA precursor. (531 aa)    
Predicted Functional Partners:
nikB_1
Nickel transport system permease protein NikB.
 
 
 0.963
gsiD_4
Glutathione transport system permease protein GsiD.
 
 
 0.956
ddpC
Putative D,D-dipeptide transport system permease protein DdpC.
 
 
 0.954
oppF_5
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.946
oppF_1
Oligopeptide transport ATP-binding protein OppF.
 
 
 0.941
gsiA
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.924
gsiD_1
Glutathione transport system permease protein GsiD.
 
 
 0.923
gsiD_3
Glutathione transport system permease protein GsiD.
 
 
 0.921
gsiD_2
Glutathione transport system permease protein GsiD.
 
 
 0.920
oppF_3
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.919
Your Current Organism:
Clostridium magnum
NCBI taxonomy Id: 1121326
Other names: C. magnum DSM 2767, Clostridium magnum DSM 2767, Clostridium magnum Wo BD P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.