STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdG_2Putative amino acid permease YhdG. (467 aa)    
Predicted Functional Partners:
malL
Oligo-1,6-glucosidase.
   
 0.860
nadE_2
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.616
rpfC_2
Sensory/regulatory protein RpfC.
  
 
 0.575
KZL92338.1
Hypothetical protein.
  
 
 0.575
aroK_2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
   
 0.567
KZL92479.1
Hypothetical protein.
    
 0.559
KZL90871.1
Hypothetical protein.
    
 0.559
KZL89562.1
Hypothetical protein.
    
 0.559
KZL88950.1
Hypothetical protein.
    
 0.559
KZL90301.1
Ankyrin repeat.
   
 0.498
Your Current Organism:
Clostridium magnum
NCBI taxonomy Id: 1121326
Other names: C. magnum DSM 2767, Clostridium magnum DSM 2767, Clostridium magnum Wo BD P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.