STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JWYL7_0590KEGG: hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane. (311 aa)    
Predicted Functional Partners:
JWYL7_0591
PFAM: CAT RNA-binding domain protein; KEGG: sacT, SACPA operon antiterminator; SMART: CAT RNA-binding domain protein.
       0.514
JWYL7_0592
Transcriptional antiterminator, BglG; KEGG: sacT, SACPA operon antiterminator; PFAM: PRD domain protein.
       0.514
JWYL7_1465
KEGG: hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane.
  
     0.488
Your Current Organism:
Clostridium paradoxum
NCBI taxonomy Id: 1121328
Other names: Clostridium paradoxum DSM 7308, Clostridium paradoxum JW-YL-7, [. paradoxum JW-YL-7 = DSM 7308, [Clostridium] paradoxum DSM 7308, [Clostridium] paradoxum DSM 7308 = JW-YL-7, [Clostridium] paradoxum JW-YL-7 = DSM 7308
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.