STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JWYL7_1631KEGG: N-acetylmuramoyl-L-alanine amidase; PFAM: transglutaminase domain-containing protein, cell wall binding repeat 2-containing protein; SMART: transglutaminase domain-containing protein. (539 aa)    
Predicted Functional Partners:
JWYL7_0746
PFAM: cell wall hydrolase/autolysin; KEGG: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
  
 
 0.866
JWYL7_1076
SMART: cell wall hydrolase/autolysin; KEGG: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin, Sporulation domain-containing protein.
  
 
 0.866
JWYL7_1630
PFAM: GGDEF domain containing protein, metal-dependent phosphohydrolase HD sub domain-containing protein; TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein, metal-dependent phosphohydrolase HD region, GAF domain protein; KEGG: diguanylate cyclase and metal dependent phosphohydrolase.
       0.737
JWYL7_1632
PFAM: peptidase M19 renal dipeptidase; KEGG: membrane dipeptidase.
       0.678
JWYL7_1755
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ATPase AAA.
  
     0.576
JWYL7_1906
KEGG: SpoIID/LytB domain-containing protein; SMART: cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin, Stage II sporulation protein D; TIGRFAM: SpoIID/LytB domain protein.
  
 
 0.574
JWYL7_1629
KEGG: Lipoprotein LpqB, GerMN domain.
       0.521
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.504
JWYL7_1633
KEGG: hypothetical protein; PFAM: protein of unknown function DUF1659.
       0.477
JWYL7_0091
KEGG: cwlD, Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; SMART: cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin.
  
 
 0.466
Your Current Organism:
Clostridium paradoxum
NCBI taxonomy Id: 1121328
Other names: Clostridium paradoxum DSM 7308, Clostridium paradoxum JW-YL-7, [. paradoxum JW-YL-7 = DSM 7308, [Clostridium] paradoxum DSM 7308, [Clostridium] paradoxum DSM 7308 = JW-YL-7, [Clostridium] paradoxum JW-YL-7 = DSM 7308
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