node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ42690.1 | SHJ42817.1 | SAMN02745248_00076 | SAMN02745248_00080 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Hypothetical protein; Belongs to the UPF0109 family. | 0.535 |
SHJ42690.1 | SHJ42906.1 | SAMN02745248_00076 | SAMN02745248_00083 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.743 |
SHJ42690.1 | ffh | SAMN02745248_00076 | SAMN02745248_00082 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.588 |
SHJ42690.1 | ftsY | SAMN02745248_00076 | SAMN02745248_00084 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.424 |
SHJ42690.1 | rimM | SAMN02745248_00076 | SAMN02745248_00079 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.708 |
SHJ42690.1 | rpsP | SAMN02745248_00076 | SAMN02745248_00081 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.730 |
SHJ42690.1 | smc | SAMN02745248_00076 | SAMN02745248_00085 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.510 |
SHJ42817.1 | SHJ42690.1 | SAMN02745248_00080 | SAMN02745248_00076 | Hypothetical protein; Belongs to the UPF0109 family. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.535 |
SHJ42817.1 | SHJ42906.1 | SAMN02745248_00080 | SAMN02745248_00083 | Hypothetical protein; Belongs to the UPF0109 family. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.770 |
SHJ42817.1 | ffh | SAMN02745248_00080 | SAMN02745248_00082 | Hypothetical protein; Belongs to the UPF0109 family. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.769 |
SHJ42817.1 | ftsY | SAMN02745248_00080 | SAMN02745248_00084 | Hypothetical protein; Belongs to the UPF0109 family. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.651 |
SHJ42817.1 | rimM | SAMN02745248_00080 | SAMN02745248_00079 | Hypothetical protein; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.909 |
SHJ42817.1 | rpsP | SAMN02745248_00080 | SAMN02745248_00081 | Hypothetical protein; Belongs to the UPF0109 family. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.981 |
SHJ42817.1 | smc | SAMN02745248_00080 | SAMN02745248_00085 | Hypothetical protein; Belongs to the UPF0109 family. | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.651 |
SHJ42906.1 | SHJ42690.1 | SAMN02745248_00083 | SAMN02745248_00076 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.743 |
SHJ42906.1 | SHJ42817.1 | SAMN02745248_00083 | SAMN02745248_00080 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein; Belongs to the UPF0109 family. | 0.770 |
SHJ42906.1 | SHJ44581.1 | SAMN02745248_00083 | SAMN02745248_00143 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | 0.765 |
SHJ42906.1 | SHJ45028.1 | SAMN02745248_00083 | SAMN02745248_00158 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | tRNA (adenine22-N1)-methyltransferase. | 0.694 |
SHJ42906.1 | ffh | SAMN02745248_00083 | SAMN02745248_00082 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.977 |
SHJ42906.1 | ftsY | SAMN02745248_00083 | SAMN02745248_00084 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.760 |