Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ46980.1 | SHJ47130.1 | SAMN02745248_00220 | SAMN02745248_00224 | Rod shape determining protein RodA; Belongs to the SEDS family. | Penicillin-binding protein 2. | 0.973 |
SHJ46980.1 | SHJ47204.1 | SAMN02745248_00220 | SAMN02745248_00226 | Rod shape determining protein RodA; Belongs to the SEDS family. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.915 |
SHJ46980.1 | SHJ47242.1 | SAMN02745248_00220 | SAMN02745248_00227 | Rod shape determining protein RodA; Belongs to the SEDS family. | Rod shape-determining protein MreB. | 0.908 |
SHJ46980.1 | SHJ67077.1 | SAMN02745248_00220 | SAMN02745248_00652 | Rod shape determining protein RodA; Belongs to the SEDS family. | Cell division protein FtsQ; Essential cell division protein. | 0.853 |
SHJ46980.1 | SHJ67222.1 | SAMN02745248_00220 | SAMN02745248_00657 | Rod shape determining protein RodA; Belongs to the SEDS family. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.970 |
SHJ46980.1 | SHJ94679.1 | SAMN02745248_00220 | SAMN02745248_01383 | Rod shape determining protein RodA; Belongs to the SEDS family. | Peptidoglycan glycosyltransferase. | 0.992 |
SHJ46980.1 | SHK41438.1 | SAMN02745248_00220 | SAMN02745248_02491 | Rod shape determining protein RodA; Belongs to the SEDS family. | Rod shape-determining protein MreB. | 0.854 |
SHJ46980.1 | mraY | SAMN02745248_00220 | SAMN02745248_00654 | Rod shape determining protein RodA; Belongs to the SEDS family. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.833 |
SHJ46980.1 | murC | SAMN02745248_00220 | SAMN02745248_00975 | Rod shape determining protein RodA; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.877 |
SHJ46980.1 | murG | SAMN02745248_00220 | SAMN02745248_00718 | Rod shape determining protein RodA; Belongs to the SEDS family. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.898 |
SHJ47130.1 | SHJ46980.1 | SAMN02745248_00224 | SAMN02745248_00220 | Penicillin-binding protein 2. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.973 |
SHJ47130.1 | SHJ47204.1 | SAMN02745248_00224 | SAMN02745248_00226 | Penicillin-binding protein 2. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.986 |
SHJ47130.1 | SHJ47242.1 | SAMN02745248_00224 | SAMN02745248_00227 | Penicillin-binding protein 2. | Rod shape-determining protein MreB. | 0.960 |
SHJ47130.1 | SHJ67077.1 | SAMN02745248_00224 | SAMN02745248_00652 | Penicillin-binding protein 2. | Cell division protein FtsQ; Essential cell division protein. | 0.893 |
SHJ47130.1 | SHJ67222.1 | SAMN02745248_00224 | SAMN02745248_00657 | Penicillin-binding protein 2. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.897 |
SHJ47130.1 | SHJ94679.1 | SAMN02745248_00224 | SAMN02745248_01383 | Penicillin-binding protein 2. | Peptidoglycan glycosyltransferase. | 0.902 |
SHJ47130.1 | SHK41438.1 | SAMN02745248_00224 | SAMN02745248_02491 | Penicillin-binding protein 2. | Rod shape-determining protein MreB. | 0.845 |
SHJ47130.1 | murC | SAMN02745248_00224 | SAMN02745248_00975 | Penicillin-binding protein 2. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.615 |
SHJ47204.1 | SHJ46980.1 | SAMN02745248_00226 | SAMN02745248_00220 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.915 |
SHJ47204.1 | SHJ47130.1 | SAMN02745248_00226 | SAMN02745248_00224 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Penicillin-binding protein 2. | 0.986 |
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