STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ49113.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (231 aa)    
Predicted Functional Partners:
SHJ49085.1
Signal transduction histidine kinase.
  0.981
SHJ76386.1
Signal transduction histidine kinase.
 0.977
SHJ80395.1
Signal transduction histidine kinase.
 0.938
SHK20991.1
PAS fold.
 0.927
SHK20583.1
Signal transduction histidine kinase.
  0.926
SHJ44073.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.916
SHK51995.1
Signal transduction histidine kinase.
 0.914
SHJ82477.1
Signal transduction histidine kinase.
 0.901
SHK16403.1
Signal transduction histidine kinase.
  0.887
SHK11864.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.872
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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