Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ53287.1 | SHJ53319.1 | SAMN02745248_00317 | SAMN02745248_00318 | Uncharacterized protein. | Hypothetical protein. | 0.481 |
SHJ53319.1 | SHJ53287.1 | SAMN02745248_00318 | SAMN02745248_00317 | Hypothetical protein. | Uncharacterized protein. | 0.481 |
SHJ53319.1 | SHJ76386.1 | SAMN02745248_00318 | SAMN02745248_00873 | Hypothetical protein. | Signal transduction histidine kinase. | 0.536 |
SHJ53319.1 | SHJ81849.1 | SAMN02745248_00318 | SAMN02745248_01023 | Hypothetical protein. | RHS repeat-associated core domain-containing protein. | 0.538 |
SHJ53319.1 | SHJ85848.1 | SAMN02745248_00318 | SAMN02745248_01124 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.719 |
SHJ53319.1 | SHJ86354.1 | SAMN02745248_00318 | SAMN02745248_01145 | Hypothetical protein. | Amidohydrolase, PncC family; Belongs to the CinA family. | 0.725 |
SHJ53319.1 | SHK20450.1 | SAMN02745248_00318 | SAMN02745248_02026 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.572 |
SHJ53319.1 | guaA | SAMN02745248_00318 | SAMN02745248_00445 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.707 |
SHJ53319.1 | guaB | SAMN02745248_00318 | SAMN02745248_00444 | Hypothetical protein. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.746 |
SHJ53319.1 | gyrB | SAMN02745248_00318 | SAMN02745248_01071 | Hypothetical protein. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.509 |
SHJ53319.1 | scpA | SAMN02745248_00318 | SAMN02745248_00568 | Hypothetical protein. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.803 |
SHJ76386.1 | SHJ53319.1 | SAMN02745248_00873 | SAMN02745248_00318 | Signal transduction histidine kinase. | Hypothetical protein. | 0.536 |
SHJ76386.1 | SHJ85848.1 | SAMN02745248_00873 | SAMN02745248_01124 | Signal transduction histidine kinase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.982 |
SHJ76386.1 | SHK20450.1 | SAMN02745248_00873 | SAMN02745248_02026 | Signal transduction histidine kinase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.994 |
SHJ76386.1 | guaA | SAMN02745248_00873 | SAMN02745248_00445 | Signal transduction histidine kinase. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.478 |
SHJ76386.1 | guaB | SAMN02745248_00873 | SAMN02745248_00444 | Signal transduction histidine kinase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.602 |
SHJ81849.1 | SHJ53319.1 | SAMN02745248_01023 | SAMN02745248_00318 | RHS repeat-associated core domain-containing protein. | Hypothetical protein. | 0.538 |
SHJ85848.1 | SHJ53319.1 | SAMN02745248_01124 | SAMN02745248_00318 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.719 |
SHJ85848.1 | SHJ76386.1 | SAMN02745248_01124 | SAMN02745248_00873 | Diguanylate cyclase (GGDEF) domain-containing protein. | Signal transduction histidine kinase. | 0.982 |
SHJ85848.1 | SHJ86354.1 | SAMN02745248_01124 | SAMN02745248_01145 | Diguanylate cyclase (GGDEF) domain-containing protein. | Amidohydrolase, PncC family; Belongs to the CinA family. | 0.437 |
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