STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ54043.1ABC-2 type transport system permease protein. (268 aa)    
Predicted Functional Partners:
SHJ54114.1
ABC-2 type transport system permease protein.
 
  
  0.959
SHJ54077.1
ABC-2 type transport system ATP-binding protein.
 
    0.929
SHK29339.1
ABC-2 type transport system ATP-binding protein.
 
    0.776
SHK29266.1
DNA-binding transcriptional regulator, ArsR family.
 
     0.739
SHJ54006.1
Hypothetical protein.
       0.723
SHJ53974.1
Uncharacterized protein YjbK.
       0.642
SHK29376.1
ABC-2 type transport system permease protein.
 
  
 
0.639
SHK29318.1
ABC-2 type transport system permease protein.
 
  
 
0.568
SHJ54147.1
Cyclic pyranopterin monophosphate synthase subunit MoaA.
       0.529
SHJ54178.1
Hypothetical protein.
       0.529
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.