STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ92553.1Rubrerythrin. (180 aa)    
Predicted Functional Partners:
SHJ92576.1
Hypothetical protein.
       0.752
SHJ92602.1
Hypothetical protein.
       0.702
SHK48973.1
[FeFe] hydrogenase, group A.
   
 0.568
SHJ91132.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
   
 0.529
SHJ92525.1
L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.486
SHK19035.1
Rubredoxin.
  
  
 0.481
SHJ69118.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.444
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.