STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ98505.1Putative aminopeptidase FrvX. (344 aa)    
Predicted Functional Partners:
SHK21642.1
Endoglucanase.
  
    0.748
SHJ98534.1
Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains.
       0.686
SHJ57098.1
Cellulose binding domain-containing protein.
     
 0.677
SHK36530.1
Cellulose binding domain-containing protein.
     
 0.677
SHK21702.1
Endoglucanase; Belongs to the peptidase M42 family.
  
    0.607
SHJ98480.1
Helix-turn-helix domain-containing protein.
       0.424
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.