STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK02587.1Transcriptional regulator, GntR family. (128 aa)    
Predicted Functional Partners:
SHJ45854.1
Transcriptional regulator, GntR family.
  
     0.773
SHK02646.1
ABC-2 type transport system ATP-binding protein.
  
    0.746
SHK02620.1
ABC-2 type transport system permease protein.
       0.720
SHK16540.1
Hypothetical protein.
 
   
 0.692
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.475
SHK02554.1
Helix-turn-helix domain-containing protein.
       0.459
SHK40473.1
ABC-2 type transport system ATP-binding protein.
  
    0.458
SHK40348.1
ABC-2 type transport system ATP-binding protein.
  
    0.451
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.