Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK05072.1 | SHK05163.1 | SAMN02745248_01661 | SAMN02745248_01664 | RNA polymerase sigma factor, sigma-70 family. | Conjugative transposon protein TcpC. | 0.743 |
SHK05072.1 | SHK05192.1 | SAMN02745248_01661 | SAMN02745248_01665 | RNA polymerase sigma factor, sigma-70 family. | Cell wall-associated hydrolase, NlpC family. | 0.675 |
SHK05072.1 | SHK05216.1 | SAMN02745248_01661 | SAMN02745248_01666 | RNA polymerase sigma factor, sigma-70 family. | Hypothetical protein. | 0.726 |
SHK05072.1 | SHK05270.1 | SAMN02745248_01661 | SAMN02745248_01668 | RNA polymerase sigma factor, sigma-70 family. | Antirestriction protein (ArdA). | 0.625 |
SHK05072.1 | SHK05330.1 | SAMN02745248_01661 | SAMN02745248_01670 | RNA polymerase sigma factor, sigma-70 family. | Phage replication initiation protein. | 0.652 |
SHK05072.1 | SHK05364.1 | SAMN02745248_01661 | SAMN02745248_01671 | RNA polymerase sigma factor, sigma-70 family. | DNA segregation ATPase FtsK/SpoIIIE and related proteins. | 0.505 |
SHK05072.1 | SHK05388.1 | SAMN02745248_01661 | SAMN02745248_01672 | RNA polymerase sigma factor, sigma-70 family. | Protein of unknown function. | 0.564 |
SHK05072.1 | SHK05414.1 | SAMN02745248_01661 | SAMN02745248_01673 | RNA polymerase sigma factor, sigma-70 family. | Protein of unknown function. | 0.550 |
SHK05163.1 | SHK05072.1 | SAMN02745248_01664 | SAMN02745248_01661 | Conjugative transposon protein TcpC. | RNA polymerase sigma factor, sigma-70 family. | 0.743 |
SHK05163.1 | SHK05192.1 | SAMN02745248_01664 | SAMN02745248_01665 | Conjugative transposon protein TcpC. | Cell wall-associated hydrolase, NlpC family. | 0.956 |
SHK05163.1 | SHK05216.1 | SAMN02745248_01664 | SAMN02745248_01666 | Conjugative transposon protein TcpC. | Hypothetical protein. | 0.962 |
SHK05163.1 | SHK05242.1 | SAMN02745248_01664 | SAMN02745248_01667 | Conjugative transposon protein TcpC. | AAA-like domain-containing protein. | 0.948 |
SHK05163.1 | SHK05270.1 | SAMN02745248_01664 | SAMN02745248_01668 | Conjugative transposon protein TcpC. | Antirestriction protein (ArdA). | 0.786 |
SHK05163.1 | SHK05300.1 | SAMN02745248_01664 | SAMN02745248_01669 | Conjugative transposon protein TcpC. | Hypothetical protein. | 0.778 |
SHK05163.1 | SHK05330.1 | SAMN02745248_01664 | SAMN02745248_01670 | Conjugative transposon protein TcpC. | Phage replication initiation protein. | 0.783 |
SHK05163.1 | SHK05364.1 | SAMN02745248_01664 | SAMN02745248_01671 | Conjugative transposon protein TcpC. | DNA segregation ATPase FtsK/SpoIIIE and related proteins. | 0.775 |
SHK05163.1 | SHK05388.1 | SAMN02745248_01664 | SAMN02745248_01672 | Conjugative transposon protein TcpC. | Protein of unknown function. | 0.778 |
SHK05163.1 | SHK05414.1 | SAMN02745248_01664 | SAMN02745248_01673 | Conjugative transposon protein TcpC. | Protein of unknown function. | 0.778 |
SHK05192.1 | SHK05072.1 | SAMN02745248_01665 | SAMN02745248_01661 | Cell wall-associated hydrolase, NlpC family. | RNA polymerase sigma factor, sigma-70 family. | 0.675 |
SHK05192.1 | SHK05163.1 | SAMN02745248_01665 | SAMN02745248_01664 | Cell wall-associated hydrolase, NlpC family. | Conjugative transposon protein TcpC. | 0.956 |
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