STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK05192.1Cell wall-associated hydrolase, NlpC family. (333 aa)    
Predicted Functional Partners:
SHK05163.1
Conjugative transposon protein TcpC.
 
 
   0.956
SHK05216.1
Hypothetical protein.
 
  
 0.955
SHK05242.1
AAA-like domain-containing protein.
 
     0.952
SHK05388.1
Protein of unknown function.
 
  
 0.846
SHK05270.1
Antirestriction protein (ArdA).
 
    0.830
SHK05300.1
Hypothetical protein.
 
    0.814
SHK05364.1
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
  
 0.796
SHK05330.1
Phage replication initiation protein.
 
    0.788
SHK05414.1
Protein of unknown function.
 
     0.783
SHK05072.1
RNA polymerase sigma factor, sigma-70 family.
  
     0.675
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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