STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK05242.1AAA-like domain-containing protein. (815 aa)    
Predicted Functional Partners:
SHK05216.1
Hypothetical protein.
 
     0.961
SHK05192.1
Cell wall-associated hydrolase, NlpC family.
 
     0.952
SHK05163.1
Conjugative transposon protein TcpC.
 
     0.948
SHK05270.1
Antirestriction protein (ArdA).
 
     0.830
SHK05300.1
Hypothetical protein.
 
     0.800
SHK05330.1
Phage replication initiation protein.
 
     0.798
SHK05364.1
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
   
 0.789
SHK05388.1
Protein of unknown function.
 
     0.785
SHK05414.1
Protein of unknown function.
 
     0.785
SHJ95981.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
    
 
 0.665
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.