Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK12165.1 | SHK12195.1 | SAMN02745248_01833 | SAMN02745248_01834 | Small redox-active disulfide protein 2. | GTPase, G3E family. | 0.809 |
SHK12165.1 | SHK12223.1 | SAMN02745248_01833 | SAMN02745248_01835 | Small redox-active disulfide protein 2. | Hypothetical protein. | 0.927 |
SHK12165.1 | SHK12252.1 | SAMN02745248_01833 | SAMN02745248_01836 | Small redox-active disulfide protein 2. | Arsenite transporter, ACR3 family. | 0.657 |
SHK12195.1 | SHK12165.1 | SAMN02745248_01834 | SAMN02745248_01833 | GTPase, G3E family. | Small redox-active disulfide protein 2. | 0.809 |
SHK12195.1 | SHK12223.1 | SAMN02745248_01834 | SAMN02745248_01835 | GTPase, G3E family. | Hypothetical protein. | 0.782 |
SHK12195.1 | SHK12252.1 | SAMN02745248_01834 | SAMN02745248_01836 | GTPase, G3E family. | Arsenite transporter, ACR3 family. | 0.489 |
SHK12195.1 | SHK20769.1 | SAMN02745248_01834 | SAMN02745248_02036 | GTPase, G3E family. | Phosphotransferase system, fructose-specific IIC component. | 0.486 |
SHK12195.1 | map | SAMN02745248_01834 | SAMN02745248_01123 | GTPase, G3E family. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.742 |
SHK12195.1 | rpmB | SAMN02745248_01834 | SAMN02745248_00103 | GTPase, G3E family. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.553 |
SHK12195.1 | rpmG | SAMN02745248_01834 | SAMN02745248_02692 | GTPase, G3E family. | LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family. | 0.511 |
SHK12195.1 | rpsZ | SAMN02745248_01834 | SAMN02745248_02626 | GTPase, G3E family. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.698 |
SHK12223.1 | SHK12165.1 | SAMN02745248_01835 | SAMN02745248_01833 | Hypothetical protein. | Small redox-active disulfide protein 2. | 0.927 |
SHK12223.1 | SHK12195.1 | SAMN02745248_01835 | SAMN02745248_01834 | Hypothetical protein. | GTPase, G3E family. | 0.782 |
SHK12223.1 | SHK12252.1 | SAMN02745248_01835 | SAMN02745248_01836 | Hypothetical protein. | Arsenite transporter, ACR3 family. | 0.618 |
SHK12252.1 | SHK12165.1 | SAMN02745248_01836 | SAMN02745248_01833 | Arsenite transporter, ACR3 family. | Small redox-active disulfide protein 2. | 0.657 |
SHK12252.1 | SHK12195.1 | SAMN02745248_01836 | SAMN02745248_01834 | Arsenite transporter, ACR3 family. | GTPase, G3E family. | 0.489 |
SHK12252.1 | SHK12223.1 | SAMN02745248_01836 | SAMN02745248_01835 | Arsenite transporter, ACR3 family. | Hypothetical protein. | 0.618 |
SHK20769.1 | SHK12195.1 | SAMN02745248_02036 | SAMN02745248_01834 | Phosphotransferase system, fructose-specific IIC component. | GTPase, G3E family. | 0.486 |
map | SHK12195.1 | SAMN02745248_01123 | SAMN02745248_01834 | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | GTPase, G3E family. | 0.742 |
map | rpsZ | SAMN02745248_01123 | SAMN02745248_02626 | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.982 |
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