Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ48720.1 | SHJ69118.1 | SAMN02745248_00274 | SAMN02745248_00716 | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.976 |
SHJ48720.1 | SHK11651.1 | SAMN02745248_00274 | SAMN02745248_01814 | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Alkylmercury lyase. | 0.591 |
SHJ48720.1 | SHK31130.1 | SAMN02745248_00274 | SAMN02745248_02270 | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Butyrate kinase; Belongs to the acetokinase family. | 0.637 |
SHJ48720.1 | SHK46523.1 | SAMN02745248_00274 | SAMN02745248_02603 | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Dihydrolipoamide dehydrogenase. | 0.914 |
SHJ48720.1 | buk | SAMN02745248_00274 | SAMN02745248_02269 | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Butyrate kinase; Belongs to the acetokinase family. | 0.637 |
SHJ69118.1 | SHJ48720.1 | SAMN02745248_00716 | SAMN02745248_00274 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.976 |
SHJ69118.1 | SHK11651.1 | SAMN02745248_00716 | SAMN02745248_01814 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Alkylmercury lyase. | 0.963 |
SHJ69118.1 | SHK31130.1 | SAMN02745248_00716 | SAMN02745248_02270 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Butyrate kinase; Belongs to the acetokinase family. | 0.772 |
SHJ69118.1 | SHK31186.1 | SAMN02745248_00716 | SAMN02745248_02272 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | YbbR domain-containing protein. | 0.414 |
SHJ69118.1 | SHK46523.1 | SAMN02745248_00716 | SAMN02745248_02603 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Dihydrolipoamide dehydrogenase. | 0.964 |
SHJ69118.1 | ackA | SAMN02745248_00716 | SAMN02745248_00092 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.977 |
SHJ69118.1 | buk | SAMN02745248_00716 | SAMN02745248_02269 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Butyrate kinase; Belongs to the acetokinase family. | 0.772 |
SHJ69118.1 | dacA | SAMN02745248_00716 | SAMN02745248_02273 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria; Belongs to the adenylate cyclase family. DacA/CdaA subfamily. | 0.414 |
SHK11651.1 | SHJ48720.1 | SAMN02745248_01814 | SAMN02745248_00274 | Alkylmercury lyase. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.591 |
SHK11651.1 | SHJ69118.1 | SAMN02745248_01814 | SAMN02745248_00716 | Alkylmercury lyase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.963 |
SHK11651.1 | SHK31130.1 | SAMN02745248_01814 | SAMN02745248_02270 | Alkylmercury lyase. | Butyrate kinase; Belongs to the acetokinase family. | 0.470 |
SHK11651.1 | buk | SAMN02745248_01814 | SAMN02745248_02269 | Alkylmercury lyase. | Butyrate kinase; Belongs to the acetokinase family. | 0.470 |
SHK31078.1 | SHK31130.1 | SAMN02745248_02268 | SAMN02745248_02270 | DUF218 domain-containing protein. | Butyrate kinase; Belongs to the acetokinase family. | 0.773 |
SHK31078.1 | SHK31158.1 | SAMN02745248_02268 | SAMN02745248_02271 | DUF218 domain-containing protein. | Hypothetical protein. | 0.693 |
SHK31078.1 | SHK31186.1 | SAMN02745248_02268 | SAMN02745248_02272 | DUF218 domain-containing protein. | YbbR domain-containing protein. | 0.693 |
page 1 of 4