STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK52031.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (224 aa)    
Predicted Functional Partners:
SHK51995.1
Signal transduction histidine kinase.
 0.997
SHJ76386.1
Signal transduction histidine kinase.
 0.981
SHJ82477.1
Signal transduction histidine kinase.
 0.943
SHK20991.1
PAS fold.
 0.942
SHJ80395.1
Signal transduction histidine kinase.
 0.938
SHK20583.1
Signal transduction histidine kinase.
  0.925
SHJ44073.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.914
SHK16403.1
Signal transduction histidine kinase.
 0.892
SHJ49085.1
Signal transduction histidine kinase.
  0.879
SHJ80420.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
 
0.872
Your Current Organism:
Hathewaya proteolytica
NCBI taxonomy Id: 1121331
Other names: Clostridium proteolyticum DSM 3090, H. proteolytica DSM 3090, Hathewaya proteolytica DSM 3090
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