STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000686665_00257Unannotated protein. (440 aa)    
Predicted Functional Partners:
GCA_000686665_02388
Unannotated protein.
    
  0.896
GCA_000686665_00254
Unannotated protein.
 
  
 0.852
GCA_000686665_00258
Unannotated protein.
  
 
 0.811
GCA_000686665_00248
Unannotated protein.
 
    0.738
GCA_000686665_00259
Unannotated protein.
  
     0.711
GCA_000686665_02204
Unannotated protein.
  
     0.641
GCA_000686665_00249
Unannotated protein.
 
    0.631
GCA_000686665_00055
Unannotated protein.
  
 
 0.598
GCA_000686665_00865
Unannotated protein.
    
 0.515
GCA_000686665_01904
Unannotated protein.
  
 
 0.514
Your Current Organism:
Clostridium saccharogumia
NCBI taxonomy Id: 1121333
Other names: Clostridium saccharogumia DSM 17460, [. saccharogumia DSM 17460, [Clostridium] saccharogumia DSM 17460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.