STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVBStage V sporulation protein B. (518 aa)    
Predicted Functional Partners:
AGC67062.1
Hypothetical protein.
       0.723
trmK
tRNA (adenine(22)-N(1))-methyltransferase TrmK.
  
     0.629
spoVT
Stage V sporulation protein T.
 
   
 0.606
yabP
Sporulation protein YabP.
 
  
 0.605
spoIVa
Stage IV sporulation protein A.
  
  
 0.601
AGC69116.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.538
AGC68187.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.536
AGC67060.1
Transcriptional regulator, TraR/DksA family.
       0.509
AGC68084.1
Ribosomal protein HS6-type; S12/L30/L7a.
  
    0.499
spoIV
Putative stage IV sporulation protein.
 
   
 0.488
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.