STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patB1Cystathionine beta-lyase PatB. (390 aa)    
Predicted Functional Partners:
metB
Cystathionine gamma-synthase MetB.
 
 
 0.935
cysK
O-acetylserine sulfhydrylase CysK; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.917
patB2
Cystathionine beta-lyase PatB.
  
  
 
0.912
metH
Methionine synthase MetH.
     
 0.912
mdeA
Methionine gamma-lyase MdeA.
   
 0.907
csyD
O-acetylhomoserine (thiol)-lyase CysD.
   
 0.907
ahcY
Adenosylhomocysteinase AhcY; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
  0.900
hom
Homoserine dehydrogenase Hom.
    
 0.809
oppA
Oligopeptide ABC transport system subbstrate-binding protein OppA.
       0.525
AGC67083.1
Transcriptional regulator.
       0.506
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Server load: low (12%) [HD]