STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGC67115.1Peptidase M23. (324 aa)    
Predicted Functional Partners:
spoIID
Stage II sporulation protein D.
 
  
 0.770
pbpA
Penicillin-binding protein 1A.
  
     0.686
spoIIID
Stage III sporulation protein D.
     
 0.580
spoVD1
Stage V sporulation protein D.
  
    0.477
RseP
Putative zinc metalloprotease.
  
 
 
 0.459
AGC67575.1
Putative zinc metalloprotease.
 
  
 0.438
spoIIIAG
Stage III sporulation protein AH.
  
  
 0.412
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.