STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGC67160.1Putative Fe-S oxidoreductase. (331 aa)    
Predicted Functional Partners:
AGC67161.1
NADH dehydrogenase-like protein.
     
 0.732
AGC67162.1
Glycosyl transferase family 2.
       0.659
AGC67159.1
Prenyltransferase, UbiA family; Belongs to the UbiA prenyltransferase family.
 
    0.623
AGC67485.1
Radical SAM domain protein.
  
     0.587
dus1
tRNA-dihydrouridine synthase 1; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
    0.576
AGC67225.1
Putative Fe-S oxidoreductase.
  
     0.560
AGC67223.1
Putative Fe-S oxidoreductase.
  
     0.485
nrgB
Nitrogen regulatory PII-like protein NrgB; Belongs to the P(II) protein family.
  
  
 0.428
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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