STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsLPutative sugar transferase EpsL. (173 aa)    
Predicted Functional Partners:
tagA
Putative N-acetylmannosaminyltransferase TagA; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
    
 0.934
AGC67174.1
Putative polysaccharide polymerase protein.
 
  
 0.825
gmd
GDP-mannose 4,6-dehydratase Gmd; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.784
epsF
Putative glycosyltransferase EpsF.
  
 0.736
AGC69404.1
O-antigen polymerase.
  
  
 0.720
csaB
Polysaccharide pyruvyl transferase CsaB.
 
  
 0.708
AGC67179.1
Putative polysaccharide transporter.
  
  
 0.660
AGC67901.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).
     
 0.660
AGC67170.1
Transposase for insertion sequence element IS1081; Required for the transposition of the insertion element.
       0.639
xanB
Xanthan biosynthesis protein XanB.
  
  
 0.634
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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