STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGC67612.1Peptidase M42 family protein. (343 aa)    
Predicted Functional Partners:
celM
Putative aminopeptidase CelM.
 
    
0.806
AGC67611.1
Lysyl aminopeptidase.
 
    
0.709
celY
Exoglucanase-2.
   
  
 0.546
AGC67977.1
Putative alpha-glucan phosphorylase.
   
  
 0.536
ramA
alfa-L-rhamnosidase RamA.
      
 0.457
cas8a1
CRISPR-associated protein Cas8a1/Cst1.
      
 0.457
cas8a1-2
CRISPR-associated protein Cas8a1/Cst1.
      
 0.457
celZ
Endoglucanase Z.
   
  
 0.457
ileS
isoleucine--tRNA ligase IleS; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
       0.428
AGC67614.1
Carbohydrate-binding family 25 protein.
       0.427
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.