STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appB2Oligopeptide transport system permease protein AppB. (332 aa)    
Predicted Functional Partners:
appC2
Oligopeptide transport system permease protein AppC.
 
 0.997
appD2
Dipeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
 0.996
agpA
Periplasmic alpha-galactoside-binding protein AgpA.
 
 0.994
appC1
Oligopeptide transport system permease protein AppC.
 
 0.988
appD1
Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
 0.978
appA
Oligopeptide ABC transport system substrate binding protein AppA.
 
 0.965
AGC67761.1
Extracellular solute-binding protein family 5.
  
 0.945
appF2
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
  
 0.933
appB1
Oligopeptide transport system permease protein AppB.
  
  
 
0.921
oppC1
Oligopeptide ABC transport system permease protein OppC.
  
 0.894
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.