STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfAXylosidase/arabinosidase ArfA; Belongs to the glycosyl hydrolase 43 family. (525 aa)    
Predicted Functional Partners:
AGC67946.1
Putative d-4,5-unsaturated alpha-glucuronyl hydrolase.
     0.940
pgl
Polygalacturonase Pgl; Belongs to the glycosyl hydrolase 28 family.
  
 0.866
xynB
Endo-1,4-beta-xylanase XynB.
  
 0.838
pemA
Pectinesterase A.
 
     0.775
AGC68045.1
Putative rhamnogalacturonan acetylesterase.
 
   
 0.772
AGC67830.1
Endopygalactorunase; Belongs to the glycosyl hydrolase 28 family.
    0.705
AGC67944.1
Xylose isomerase domain-containing protein.
       0.697
xynA
Endo-1,4-beta-xylanase A; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.674
xynC1
Endo-1,4-beta-xylanase.
 
  
 0.661
bxlA
1,4-beta-xylosidase BxlA.
 
   
 0.622
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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