STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVD1Stage V sporulation protein D. (579 aa)    
Predicted Functional Partners:
spoVE
Stage V sporulation protein E; Belongs to the SEDS family.
 
 0.976
rodA
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.959
spoVD2
Stage V sporulation protein D.
 
  
0.933
mrdA
Penicillin-binding protein 2.
  
  
0.930
FtsQ
Putative division protein, FtsQ-type; Essential cell division protein.
  
 
 0.790
ribF
Bifunctional riboflavin kinase/FMN adenylyltransferase RibF; Belongs to the ribF family.
  
    0.781
pbpA
Penicillin-binding protein 1A.
 
 
 0.768
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.761
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
 0.738
AGC68087.1
RecJ-like phosphoesterase domain-containing protein.
     
 0.718
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.