STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGC68121.1ABC-type sugar transport system, periplasmic component. (1001 aa)    
Predicted Functional Partners:
AGC68122.1
Binding-protein-dependent transport systems inner membrane component.
 
   0.963
lplC8
Protein LplC.
 
   0.961
AGC68127.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
   0.960
AGC68124.1
Gluconolactonase.
 
    0.941
AGC68126.1
Hypothetical protein.
 
     0.941
AGC68125.1
Yip1 domain protein.
 
     0.940
AGC68128.1
Putative ABC transporter, permease protein.
 
   0.926
AGC68113.1
Putative sugar ABC transporter permease.
 
   0.887
AGC68117.1
ABC transporter, permease protein.
 
   0.876
AGC68114.1
ABC transporter, permease protein.
 
   0.871
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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