STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CpaF1AAA ATPase. (617 aa)    
Predicted Functional Partners:
TadB2
Type II secretion system F domain protein.
 
  
 0.885
TadB1
Type II secretion system F domain protein.
 
  
 0.875
AGC68356.1
Hypothetical protein.
  
  
 0.872
AGC68352.1
Hypothetical protein.
       0.819
AGC68354.1
Hypothetical protein.
       0.819
AGC68355.1
Hypothetical protein.
       0.799
CpaF2
Putative conjugal transfer protein.
 
     0.745
AGC68351.1
Hypothetical protein.
       0.726
sps11
Serine/threonine-protein kinase Sps1.
  
    0.726
AGC68349.1
Hypothetical protein.
       0.672
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.