STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xanBXanthan biosynthesis protein XanB. (357 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase Gmd; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
 0.957
mpg
Putative mannose-1-phosphate guanyltransferase Mpg.
  
 
 0.943
AGC68558.1
NAD-dependent epimerase/dehydratase.
 
  
 0.733
glmM
Phosphoglucosamine mutase GlmM; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
 0.697
AGC68561.1
TPR repeat-containing protein.
       0.695
pgiB
Glucose-6-phosphate isomerase PgiB; Belongs to the GPI family.
  
 
 0.666
acoA
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.
     
 0.655
epsL
Putative sugar transferase EpsL.
  
  
 0.634
acoB2
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta.
     
 0.625
AGC68554.1
Aminoglycoside phosphotransferase.
 
     0.453
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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