STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGC69233.1Tetratricopeptide repeat containing protein. (1101 aa)    
Predicted Functional Partners:
AGC67186.1
Glycoside hydrolase family 2; Belongs to the glycosyl hydrolase 2 family.
  
     0.763
bga
Beta-galactosidase Bga.
 
     0.763
AGC69234.1
Transcriptional regulator, AraC family '.
 
     0.680
nifJ1
Pyruvate-flavodoxin oxidoreductase NifJ.
   
   0.603
AGC67292.1
Hypothetical protein.
  
     0.554
AGC68310.1
Peptidase S41.
  
 
 0.449
fliI
Flagellum-specific ATP synthase FliI.
  
 
 0.445
AGC67901.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).
   
 
 0.428
nifJ2
Pyruvate-flavodoxin oxidoreductase NifJ.
   
   0.407
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.