STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NfhBNi,Fe-hydrogenase III small subunit. (149 aa)    
Predicted Functional Partners:
NfhA
Ni,Fe-hydrogenase III large subunit.
 
 
 0.999
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.937
nifJ1
Pyruvate-flavodoxin oxidoreductase NifJ.
  
 
 0.914
FhbC
Fe only hydrogenase 1.
  
 
 0.865
AGC68239.1
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit; Chain I.
  
 
 0.824
AGC68915.1
Thylakoid-like protein.
  
 
 0.824
AGC69392.1
Hypothetical protein.
     
 0.726
metN
D-methionine ABC transporter ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.665
AGC68726.1
Iron (metal) dependent repressor, DtxR family.
    
   0.562
mntR
Transcriptional regulator MntR.
    
   0.562
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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