STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppBDipeptide transport system permease protein DppB. (305 aa)    
Predicted Functional Partners:
oppD2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.997
oppC2
Oligopeptide transport system permease protein OppC.
 
 0.997
oppC1
Oligopeptide ABC transport system permease protein OppC.
 
 0.996
AGC69476.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.995
dppE
Dipeptide-binding protein DppE.
 
 0.994
oppF
Oligopeptide ABC transporter system ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.990
oppD1
Oligopeptide ABC transport system ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.986
oppA
Oligopeptide ABC transport system subbstrate-binding protein OppA.
 
 0.985
oppB
Oligopeptide ABC transport system permease protein OppB.
  
  
 
0.904
appC2
Oligopeptide transport system permease protein AppC.
  
 0.904
Your Current Organism:
Thermoclostridium stercorarium
NCBI taxonomy Id: 1121335
Other names: Clostridium stercorarium subsp. stercorarium DSM 8532, T. stercorarium subsp. stercorarium DSM 8532, Thermoclostridium stercorarium subsp. stercorarium DSM 8532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.