STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pinRPutative DNA-invertase from lambdoid prophage Rac. (514 aa)    
Predicted Functional Partners:
sinR
HTH-type transcriptional regulator SinR.
       0.746
KYH30788.1
Hypothetical protein.
  
     0.632
clpP1
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
 
     0.552
KYH35840.1
Phage portal protein.
 
     0.529
smc_1
Chromosome partition protein Smc.
 
     0.482
KYH30747.1
Phage terminase.
  
     0.469
KYH35871.1
Hypothetical protein.
       0.456
KYH35872.1
ORF6C domain protein.
       0.456
KYH35873.1
Hypothetical protein.
       0.456
KYH35874.1
Helix-turn-helix protein.
       0.456
Your Current Organism:
Clostridium tepidiprofundi
NCBI taxonomy Id: 1121338
Other names: C. tepidiprofundi DSM 19306, Clostridium tepidiprofundi DSM 19306, Clostridium tepidiprofundi SG 508
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.